Variant report

Variant	rs7372315
Chromosome Location	chr3:24058309-24058310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12638750	0.90[ASN][1000 genomes]
rs1397878	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs1397883	0.90[ASN][1000 genomes]
rs1511542	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533141	0.81[AMR][1000 genomes]
rs17014075	0.92[ASN][1000 genomes]
rs17014078	0.90[ASN][1000 genomes]
rs1986889	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34812592	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858571	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253421	0.90[ASN][1000 genomes]
rs71324126	0.81[AMR][1000 genomes]
rs7434131	0.81[AMR][1000 genomes]
rs7635612	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap]
rs938079	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9990311	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24046400-24060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:24053600-24065000	Weak transcription	Psoas Muscle	Psoas
3	chr3:24054600-24060200	Weak transcription	HMEC	breast
4	chr3:24055000-24060200	Weak transcription	NHEK	skin
5	chr3:24055600-24060400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:24058000-24060400	Enhancers	Fetal Muscle Leg	muscle
7	chr3:24058200-24058400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:24058200-24058800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr3:24058200-24059200	Enhancers	Aorta	Aorta
10	chr3:24058200-24060000	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links