Variant report

Variant	rs1398740
Chromosome Location	chr3:99238568-99238569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13069464	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1398746	1.00[EUR][1000 genomes]
rs1513305	1.00[EUR][1000 genomes]
rs1513308	1.00[EUR][1000 genomes]
rs1513310	0.90[AFR][1000 genomes]
rs1849494	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2248892	1.00[EUR][1000 genomes]
rs2342466	1.00[EUR][1000 genomes]
rs2342597	1.00[EUR][1000 genomes]
rs2342600	1.00[EUR][1000 genomes]
rs2669979	1.00[EUR][1000 genomes]
rs2700598	1.00[EUR][1000 genomes]
rs4928136	1.00[EUR][1000 genomes]
rs6440676	1.00[EUR][1000 genomes]
rs7627667	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99228400-99243000	Weak transcription	Aorta	Aorta
2	chr3:99238200-99242400	Weak transcription	NHDF-Ad	bronchial
3	chr3:99238400-99238600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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