Variant report

Variant	rs4928136
Chromosome Location	chr3:99269789-99269790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13069464	1.00[EUR][1000 genomes]
rs1398740	1.00[EUR][1000 genomes]
rs1398746	1.00[EUR][1000 genomes]
rs1513305	1.00[EUR][1000 genomes]
rs1513308	1.00[EUR][1000 genomes]
rs1849494	1.00[EUR][1000 genomes]
rs2248892	1.00[EUR][1000 genomes]
rs2342466	1.00[EUR][1000 genomes]
rs2342597	1.00[EUR][1000 genomes]
rs2342600	1.00[EUR][1000 genomes]
rs2669979	1.00[EUR][1000 genomes]
rs2700598	1.00[EUR][1000 genomes]
rs6440676	1.00[EUR][1000 genomes]
rs7627667	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99265400-99269800	Enhancers	HUVEC	blood vessel
2	chr3:99266400-99269800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:99267000-99269800	Enhancers	NHEK	skin
4	chr3:99267000-99270000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:99267200-99269800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:99268600-99270000	Enhancers	NHDF-Ad	bronchial
7	chr3:99269000-99271800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:99269600-99270400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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