Variant report

Variant	rs1398746
Chromosome Location	chr3:99265150-99265151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13069464	1.00[EUR][1000 genomes]
rs1398740	1.00[EUR][1000 genomes]
rs1513305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1513306	0.97[AFR][1000 genomes]
rs1513308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1849494	1.00[EUR][1000 genomes]
rs2248892	1.00[EUR][1000 genomes]
rs2342466	1.00[EUR][1000 genomes]
rs2342597	1.00[EUR][1000 genomes]
rs2342598	1.00[AMR][1000 genomes]
rs2342600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2669979	1.00[EUR][1000 genomes]
rs2700598	1.00[EUR][1000 genomes]
rs4928136	1.00[EUR][1000 genomes]
rs6440676	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7627667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99261200-99265600	Enhancers	Hela-S3	cervix
2	chr3:99261600-99265600	Enhancers	HSMM	muscle
3	chr3:99262000-99265400	Enhancers	NHDF-Ad	bronchial
4	chr3:99262800-99265400	Enhancers	NHEK	skin
5	chr3:99263400-99265200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:99263400-99265600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:99263800-99265200	Enhancers	Fetal Lung	lung
8	chr3:99264000-99265600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:99264200-99265400	Flanking Active TSS	HUVEC	blood vessel
10	chr3:99264400-99265200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr3:99264400-99265200	Active TSS	Aorta	Aorta
12	chr3:99264400-99267200	Weak transcription	HMEC	breast
13	chr3:99264600-99265200	Weak transcription	Fetal Kidney	kidney
14	chr3:99264600-99265200	Active TSS	Ovary	ovary
15	chr3:99264600-99265200	Active TSS	NHLF	lung
16	chr3:99264600-99265400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:99264600-99265400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:99264600-99267000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:99264800-99267000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:99264800-99268600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:99265000-99265600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:99265000-99265600	Active TSS	Osteobl	bone
23	chr3:99265000-99267200	Weak transcription	HSMMtube	muscle
24	chr3:99265000-99269400	Enhancers	Adipose Nuclei	Adipose

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