Variant report

Variant	rs7627667
Chromosome Location	chr3:99257539-99257540
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13069464	1.00[EUR][1000 genomes]
rs1398740	1.00[EUR][1000 genomes]
rs1398746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1513305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1513308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1849494	1.00[EUR][1000 genomes]
rs2248892	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2342466	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2342597	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2342598	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2342600	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2669979	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2669982	0.97[AFR][1000 genomes]
rs2700598	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4928136	1.00[EUR][1000 genomes]
rs6440676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3422853	chr3:99208019-99342748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99246600-99262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:99254800-99258800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99255200-99261400	Weak transcription	HMEC	breast
4	chr3:99255600-99262000	Weak transcription	NHLF	lung
5	chr3:99256000-99260200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:99256000-99261200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:99256400-99261800	Weak transcription	Placenta	Placenta
8	chr3:99256600-99257600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:99256600-99261400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:99256600-99261800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:99256600-99261800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:99256600-99261800	Weak transcription	Adipose Nuclei	Adipose
13	chr3:99256600-99263800	Weak transcription	Aorta	Aorta
14	chr3:99256800-99261800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:99256800-99261800	Weak transcription	Osteobl	bone
16	chr3:99256800-99262000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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