Variant report
| Variant | rs1400551 |
|---|---|
| Chromosome Location | chr8:69323052-69323053 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11994968 | 1.00[EUR][1000 genomes] |
| rs16934389 | 1.00[EUR][1000 genomes] |
| rs16934407 | 1.00[EUR][1000 genomes] |
| rs16934575 | 1.00[CEU][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16934578 | 1.00[CEU][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57801041 | 1.00[EUR][1000 genomes] |
| rs58125593 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6981953 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6982194 | 1.00[EUR][1000 genomes] |
| rs6998686 | 1.00[EUR][1000 genomes] |
| rs6999119 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72664912 | 1.00[EUR][1000 genomes] |
| rs72664918 | 1.00[EUR][1000 genomes] |
| rs72664937 | 1.00[EUR][1000 genomes] |
| rs72664939 | 1.00[EUR][1000 genomes] |
| rs72664940 | 1.00[EUR][1000 genomes] |
| rs72664943 | 1.00[EUR][1000 genomes] |
| rs72664944 | 1.00[EUR][1000 genomes] |
| rs73262970 | 1.00[EUR][1000 genomes] |
| rs73683565 | 1.00[EUR][1000 genomes] |
| rs73683567 | 1.00[EUR][1000 genomes] |
| rs7827049 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948687 | chr8:69041121-69642540 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv508512 | chr8:69268794-69324532 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1023810 | chr8:69308665-69440129 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv539644 | chr8:69308665-69440129 | Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:69317200-69342600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr8:69321000-69324000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
