Variant report

Variant	rs57801041
Chromosome Location	chr8:69149933-69149934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11994968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1400551	1.00[EUR][1000 genomes]
rs16934389	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934407	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934575	1.00[EUR][1000 genomes]
rs16934578	1.00[EUR][1000 genomes]
rs58125593	1.00[EUR][1000 genomes]
rs6981953	1.00[EUR][1000 genomes]
rs6982194	1.00[EUR][1000 genomes]
rs6998686	1.00[EUR][1000 genomes]
rs6999119	1.00[EUR][1000 genomes]
rs72664912	1.00[EUR][1000 genomes]
rs72664918	1.00[EUR][1000 genomes]
rs72664937	1.00[EUR][1000 genomes]
rs72664939	1.00[EUR][1000 genomes]
rs72664940	1.00[EUR][1000 genomes]
rs72664943	1.00[EUR][1000 genomes]
rs72664944	1.00[EUR][1000 genomes]
rs73262970	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331644	chr8:68806705-69189171	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv890976	chr8:69100070-69155563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69130000-69151800	Weak transcription	Lung	lung
2	chr8:69131000-69151200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:69133000-69151800	Weak transcription	Left Ventricle	heart
4	chr8:69142000-69151400	Weak transcription	Aorta	Aorta
5	chr8:69142600-69153400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:69143200-69155600	Weak transcription	Adipose Nuclei	Adipose
7	chr8:69143600-69156000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:69146000-69155800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:69149800-69150200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr8:69149800-69150800	Enhancers	NHDF-Ad	bronchial
11	chr8:69149800-69152200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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