Variant report

Variant	rs58125593
Chromosome Location	chr8:69320904-69320905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11994968	1.00[EUR][1000 genomes]
rs12541312	0.87[ASN][1000 genomes]
rs12545937	0.88[ASN][1000 genomes]
rs1400551	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1517129	0.88[ASN][1000 genomes]
rs1517130	0.88[ASN][1000 genomes]
rs16919092	0.83[ASN][1000 genomes]
rs16934389	1.00[EUR][1000 genomes]
rs16934407	1.00[EUR][1000 genomes]
rs16934575	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16934578	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1867633	0.98[ASN][1000 genomes]
rs1980177	0.87[ASN][1000 genomes]
rs2255882	0.88[ASN][1000 genomes]
rs2591019	0.88[ASN][1000 genomes]
rs2591020	0.88[ASN][1000 genomes]
rs2591022	0.87[ASN][1000 genomes]
rs2676633	0.87[ASN][1000 genomes]
rs2676634	0.87[ASN][1000 genomes]
rs2676648	0.84[ASN][1000 genomes]
rs2676649	0.88[ASN][1000 genomes]
rs2676650	0.88[ASN][1000 genomes]
rs2676652	0.88[ASN][1000 genomes]
rs2676654	0.88[ASN][1000 genomes]
rs2676656	0.88[ASN][1000 genomes]
rs2944715	0.87[ASN][1000 genomes]
rs56708665	0.87[ASN][1000 genomes]
rs57801041	1.00[EUR][1000 genomes]
rs59098392	0.98[ASN][1000 genomes]
rs59134336	0.98[ASN][1000 genomes]
rs6981953	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6982194	1.00[EUR][1000 genomes]
rs6998686	1.00[EUR][1000 genomes]
rs6999119	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7000104	0.87[ASN][1000 genomes]
rs72664912	1.00[EUR][1000 genomes]
rs72664918	1.00[EUR][1000 genomes]
rs72664937	1.00[EUR][1000 genomes]
rs72664939	1.00[EUR][1000 genomes]
rs72664940	1.00[EUR][1000 genomes]
rs72664943	1.00[EUR][1000 genomes]
rs72664944	1.00[EUR][1000 genomes]
rs73260764	0.87[ASN][1000 genomes]
rs73262970	1.00[EUR][1000 genomes]
rs73683565	1.00[EUR][1000 genomes]
rs73683567	1.00[EUR][1000 genomes]
rs7827049	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv508512	chr8:69268794-69324532	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1023810	chr8:69308665-69440129	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv539644	chr8:69308665-69440129	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69317200-69342600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:69320800-69321000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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