Variant report

Variant	rs1403767
Chromosome Location	chr3:135668716-135668717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10048942	0.95[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10049233	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10512981	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10512990	0.90[CEU][hapmap]
rs10935175	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs12330335	0.90[CEU][hapmap]
rs13079205	0.95[CEU][hapmap]
rs13082684	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13097248	0.83[CEU][hapmap]
rs13097946	1.00[JPT][hapmap]
rs13098245	1.00[JPT][hapmap]
rs13322891	1.00[ASN][1000 genomes]
rs13325914	1.00[JPT][hapmap]
rs13434196	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1356664	1.00[ASN][1000 genomes]
rs1393786	0.95[CEU][hapmap]
rs1393787	0.95[CEU][hapmap]
rs1401545	1.00[ASN][1000 genomes]
rs1403763	0.90[CEU][hapmap]
rs1403766	1.00[ASN][1000 genomes]
rs1403770	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs1568349	0.85[ASN][1000 genomes]
rs1568350	1.00[ASN][1000 genomes]
rs16843509	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17197552	1.00[JPT][hapmap]
rs2204259	0.85[ASN][1000 genomes]
rs28449384	0.92[ASN][1000 genomes]
rs28570106	1.00[ASN][1000 genomes]
rs28576629	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28855968	1.00[ASN][1000 genomes]
rs28875187	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34522617	0.92[ASN][1000 genomes]
rs34767379	0.92[ASN][1000 genomes]
rs35722356	1.00[ASN][1000 genomes]
rs36039354	0.92[ASN][1000 genomes]
rs4718	1.00[ASN][1000 genomes]
rs55678980	1.00[ASN][1000 genomes]
rs56308637	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56807950	0.85[ASN][1000 genomes]
rs59063369	0.85[ASN][1000 genomes]
rs66544356	0.85[ASN][1000 genomes]
rs6767060	0.90[CEU][hapmap]
rs6771997	1.00[JPT][hapmap]
rs6773469	0.85[ASN][1000 genomes]
rs6774289	1.00[JPT][hapmap]
rs6775778	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6779603	0.85[ASN][1000 genomes]
rs6792630	0.89[CEU][hapmap]
rs6793835	0.95[CEU][hapmap]
rs6799056	0.84[CEU][hapmap]
rs6802139	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6807058	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs6807242	1.00[JPT][hapmap]
rs6807565	0.92[ASN][1000 genomes]
rs6809006	1.00[JPT][hapmap]
rs73222222	0.92[ASN][1000 genomes]
rs7427833	0.92[ASN][1000 genomes]
rs7433567	0.92[ASN][1000 genomes]
rs7609938	0.85[ASN][1000 genomes]
rs7621331	1.00[JPT][hapmap]
rs7621396	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs7621425	1.00[JPT][hapmap]
rs7626676	0.85[ASN][1000 genomes]
rs7628848	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7638129	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7640153	0.85[ASN][1000 genomes]
rs7641070	0.92[ASN][1000 genomes]
rs7643661	1.00[JPT][hapmap]
rs870812	1.00[ASN][1000 genomes]
rs908825	1.00[ASN][1000 genomes]
rs9289503	1.00[JPT][hapmap]
rs9653930	0.90[CEU][hapmap]
rs9808979	1.00[JPT][hapmap]
rs9812561	1.00[JPT][hapmap]
rs9813082	0.85[ASN][1000 genomes]
rs9814505	1.00[ASN][1000 genomes]
rs9814557	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9819440	1.00[ASN][1000 genomes]
rs9819988	0.85[ASN][1000 genomes]
rs9820189	1.00[ASN][1000 genomes]
rs9824558	0.85[ASN][1000 genomes]
rs9825239	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9826806	1.00[JPT][hapmap]
rs9827662	0.90[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9829329	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9829476	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9833699	1.00[ASN][1000 genomes]
rs9833799	0.85[ASN][1000 genomes]
rs9834624	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9836374	1.00[JPT][hapmap]
rs9836758	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9837855	1.00[ASN][1000 genomes]
rs9839259	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9842840	1.00[JPT][hapmap]
rs9842864	0.92[ASN][1000 genomes]
rs9843725	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9844478	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9848322	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs9848926	0.95[CEU][hapmap]
rs9849088	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9852406	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9853577	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9854494	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9862264	1.00[JPT][hapmap]
rs9862777	0.92[ASN][1000 genomes]
rs9864247	1.00[JPT][hapmap]
rs9864656	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9864775	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9870581	1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs9872542	1.00[JPT][hapmap]
rs9875948	1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs9876837	0.85[ASN][1000 genomes]
rs9877722	1.00[ASN][1000 genomes]
rs9881400	0.95[CEU][hapmap]
rs9883808	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	esv3374702	chr3:135649303-135686527	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135668600-135669800	Enhancers	Fetal Brain Male	brain

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