Variant report
Variant | rs28875187 |
---|---|
Chromosome Location | chr3:135655008-135655009 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10048942 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10049233 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs10512981 | 0.85[ASN][1000 genomes] |
rs10935175 | 0.92[ASN][1000 genomes] |
rs13082684 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs13322891 | 1.00[ASN][1000 genomes] |
rs13434196 | 0.85[ASN][1000 genomes] |
rs1356664 | 1.00[ASN][1000 genomes] |
rs1401545 | 1.00[ASN][1000 genomes] |
rs1403766 | 1.00[ASN][1000 genomes] |
rs1403767 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1403770 | 0.92[ASN][1000 genomes] |
rs1568349 | 0.85[ASN][1000 genomes] |
rs1568350 | 1.00[ASN][1000 genomes] |
rs16843509 | 0.85[ASN][1000 genomes] |
rs2204259 | 0.85[ASN][1000 genomes] |
rs28449384 | 0.92[ASN][1000 genomes] |
rs28570106 | 1.00[ASN][1000 genomes] |
rs28576629 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs28855968 | 1.00[ASN][1000 genomes] |
rs34522617 | 0.92[ASN][1000 genomes] |
rs34767379 | 0.92[ASN][1000 genomes] |
rs35722356 | 1.00[ASN][1000 genomes] |
rs36039354 | 0.92[ASN][1000 genomes] |
rs4718 | 1.00[ASN][1000 genomes] |
rs55678980 | 1.00[ASN][1000 genomes] |
rs56308637 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs56807950 | 0.85[ASN][1000 genomes] |
rs59063369 | 0.85[ASN][1000 genomes] |
rs66544356 | 0.85[ASN][1000 genomes] |
rs6773469 | 0.85[ASN][1000 genomes] |
rs6775778 | 0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6779603 | 0.85[ASN][1000 genomes] |
rs6802139 | 0.85[ASN][1000 genomes] |
rs6807058 | 0.92[ASN][1000 genomes] |
rs6807565 | 0.92[ASN][1000 genomes] |
rs73222222 | 0.92[ASN][1000 genomes] |
rs7427833 | 0.92[ASN][1000 genomes] |
rs7433567 | 0.92[ASN][1000 genomes] |
rs7609938 | 0.85[ASN][1000 genomes] |
rs7621396 | 0.92[ASN][1000 genomes] |
rs7626676 | 0.85[ASN][1000 genomes] |
rs7628848 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7638129 | 0.85[ASN][1000 genomes] |
rs7640153 | 0.85[ASN][1000 genomes] |
rs7641070 | 0.92[ASN][1000 genomes] |
rs870812 | 1.00[ASN][1000 genomes] |
rs908825 | 1.00[ASN][1000 genomes] |
rs9813082 | 0.85[ASN][1000 genomes] |
rs9814505 | 1.00[ASN][1000 genomes] |
rs9814557 | 0.92[ASN][1000 genomes] |
rs9819440 | 1.00[ASN][1000 genomes] |
rs9819988 | 0.85[ASN][1000 genomes] |
rs9820189 | 1.00[ASN][1000 genomes] |
rs9824558 | 0.85[ASN][1000 genomes] |
rs9825239 | 0.92[ASN][1000 genomes] |
rs9827662 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs9829329 | 0.85[ASN][1000 genomes] |
rs9829476 | 0.85[ASN][1000 genomes] |
rs9833699 | 1.00[ASN][1000 genomes] |
rs9833799 | 0.85[ASN][1000 genomes] |
rs9834624 | 1.00[ASN][1000 genomes] |
rs9836758 | 0.92[ASN][1000 genomes] |
rs9837855 | 1.00[ASN][1000 genomes] |
rs9839259 | 0.85[ASN][1000 genomes] |
rs9842864 | 0.92[ASN][1000 genomes] |
rs9843725 | 0.92[ASN][1000 genomes] |
rs9844478 | 0.85[ASN][1000 genomes] |
rs9848322 | 0.92[ASN][1000 genomes] |
rs9849088 | 0.85[ASN][1000 genomes] |
rs9852406 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs9854494 | 1.00[ASN][1000 genomes] |
rs9862777 | 0.92[ASN][1000 genomes] |
rs9864656 | 0.85[ASN][1000 genomes] |
rs9864775 | 1.00[ASN][1000 genomes] |
rs9870581 | 1.00[ASN][1000 genomes] |
rs9875948 | 1.00[ASN][1000 genomes] |
rs9876837 | 0.85[ASN][1000 genomes] |
rs9877722 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv460860 | chr3:135107678-135769006 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv591829 | chr3:135107678-135769006 | Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | nsv829732 | chr3:135561706-135756840 | Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
4 | nsv869409 | chr3:135649101-136164174 | Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
5 | esv3374702 | chr3:135649303-135686527 | Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:135653400-135655800 | Enhancers | Placenta | Placenta |