Variant report

Variant	rs1409214
Chromosome Location	chr1:85290921-85290922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12024356	0.88[YRI][hapmap]
rs12047733	0.83[ASN][1000 genomes]
rs12130014	0.84[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1326002	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409213	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4907007	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9726410	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9729034	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1409214	CLCA3P	cis	parietal	SCAN
rs1409214	WDR63	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85264000-85295600	Weak transcription	NHEK	skin
2	chr1:85282400-85295800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:85287600-85295800	Weak transcription	Right Atrium	heart
4	chr1:85288800-85296800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:85289000-85291800	Enhancers	Fetal Heart	heart
6	chr1:85289400-85330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:85289600-85291000	Enhancers	Right Ventricle	heart
8	chr1:85289800-85291600	Enhancers	Left Ventricle	heart
9	chr1:85290200-85294200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:85290800-85291000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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