Variant report

Variant	rs9729034
Chromosome Location	chr1:85289748-85289749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12047733	0.84[ASN][1000 genomes]
rs12130014	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1326002	0.99[ASN][1000 genomes]
rs1409213	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1409214	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2892843	0.80[EUR][1000 genomes]
rs4907007	0.95[CHB][hapmap];0.98[CHD][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]
rs9726410	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9729034	DNASE2B	cis	parietal	SCAN
rs9729034	CLCA3P	cis	parietal	SCAN
rs9729034	MCOLN2	cis	cerebellum	SCAN
rs9729034	WDR63	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85264000-85295600	Weak transcription	NHEK	skin
2	chr1:85282400-85295800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:85287400-85290000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr1:85287600-85295800	Weak transcription	Right Atrium	heart
5	chr1:85288800-85296800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:85289000-85291800	Enhancers	Fetal Heart	heart
7	chr1:85289200-85290200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:85289400-85289800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:85289400-85290600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:85289400-85330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:85289600-85291000	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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