Variant report

Variant	rs4907007
Chromosome Location	chr1:85285744-85285745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11161454	0.81[JPT][hapmap]
rs12130014	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1326002	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1409213	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1409214	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9726410	0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9729034	0.95[CHB][hapmap];0.98[CHD][hapmap];0.87[JPT][hapmap];0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4907007	WDR63	cis	parietal	SCAN
rs4907007	LOC339524	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85264000-85295600	Weak transcription	NHEK	skin
2	chr1:85266400-85287200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:85278200-85287200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:85281200-85289200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:85282400-85295800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:85284400-85286000	Enhancers	Primary T cells from cord blood	blood
7	chr1:85284600-85285800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr1:85284800-85287800	Enhancers	Fetal Heart	heart
9	chr1:85285400-85286200	Enhancers	Left Ventricle	heart
10	chr1:85285600-85285800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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