Variant report

Variant	rs1409372
Chromosome Location	chr20:24593310-24593311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1883924	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4815284	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4815294	0.86[ASN][1000 genomes]
rs6036847	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6049799	0.96[CEU][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6049805	0.94[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs6049810	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs761437	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
3	chr20:24589400-24594000	Weak transcription	Primary T cells from cord blood	blood
4	chr20:24591200-24609200	Weak transcription	Brain Anterior Caudate	brain
5	chr20:24591600-24593400	Weak transcription	Brain Substantia Nigra	brain
6	chr20:24591600-24597600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr20:24592000-24593400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr20:24592000-24593800	Weak transcription	Dnd41	blood
9	chr20:24592000-24593800	Weak transcription	NH-A	brain
10	chr20:24592000-24594600	Enhancers	Fetal Heart	heart
11	chr20:24592000-24599400	Weak transcription	Brain Hippocampus Middle	brain
12	chr20:24592200-24598000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr20:24592400-24593400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:24592400-24593400	Weak transcription	Left Ventricle	heart
15	chr20:24592400-24593400	Weak transcription	Right Atrium	heart
16	chr20:24592400-24593400	Weak transcription	Thymus	Thymus
17	chr20:24592400-24594200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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