Variant report

Variant	rs761437
Chromosome Location	chr20:24611585-24611586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24610034..24611986-chr20:24615289..24617855,2	MCF-7	breast:
2	chr20:24610820..24613195-chr8:23266116..23269029,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1409372	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1883924	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4815280	0.84[ASW][hapmap]
rs4815281	0.84[ASW][hapmap]
rs4815284	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4815294	0.93[ASN][1000 genomes]
rs6036847	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs6049799	0.92[CEU][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes]
rs6049805	0.89[CHB][hapmap];0.95[CHD][hapmap]
rs6049810	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs761437	CST3	cis	parietal	SCAN
rs761437	NAPB	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
2	chr20:24607800-24611600	Enhancers	Brain Substantia Nigra	brain
3	chr20:24608400-24613200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr20:24608600-24615000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr20:24608800-24616800	Enhancers	Brain Hippocampus Middle	brain
6	chr20:24609200-24615200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr20:24609600-24612200	Enhancers	Brain Cingulate Gyrus	brain
8	chr20:24610400-24613400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr20:24610400-24613800	Weak transcription	Brain Anterior Caudate	brain
10	chr20:24610400-24615600	Weak transcription	Right Atrium	heart
11	chr20:24610600-24613200	Weak transcription	Fetal Muscle Leg	muscle
12	chr20:24610600-24613800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr20:24610600-24613800	Weak transcription	Gastric	stomach
14	chr20:24610600-24613800	Weak transcription	Left Ventricle	heart
15	chr20:24610600-24613800	Weak transcription	Lung	lung
16	chr20:24610600-24615000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr20:24610600-24615600	Weak transcription	Right Ventricle	heart
18	chr20:24610800-24612400	Weak transcription	Brain Angular Gyrus	brain
19	chr20:24610800-24615600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr20:24610800-24615600	Weak transcription	Thymus	Thymus
21	chr20:24611000-24613800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr20:24611000-24615200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr20:24611000-24615400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr20:24611400-24614400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr20:24611400-24615400	Weak transcription	Fetal Thymus	thymus

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