Variant report

Variant	rs6036847
Chromosome Location	chr20:24585277-24585278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1409372	0.89[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1883924	0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4815284	1.00[ASN][1000 genomes]
rs6036837	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs6049805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6083562	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs761437	0.89[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24580600-24586000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr20:24581800-24585800	Weak transcription	Brain Hippocampus Middle	brain
3	chr20:24581800-24590600	Weak transcription	Brain Anterior Caudate	brain
4	chr20:24582200-24586000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr20:24582600-24585800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr20:24583200-24599800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr20:24584200-24585800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr20:24584400-24591000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr20:24584400-24612600	Weak transcription	Aorta	Aorta
10	chr20:24585000-24585600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:24585200-24591000	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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