Variant report
| Variant | rs1419436 |
|---|---|
| Chromosome Location | chr7:126658265-126658266 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1018854 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10954141 | 1.00[CEU][hapmap] |
| rs1156652 | 1.00[CEU][hapmap] |
| rs1156653 | 1.00[CEU][hapmap] |
| rs1156654 | 1.00[CEU][hapmap] |
| rs12535891 | 1.00[CEU][hapmap] |
| rs12673312 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs13229907 | 0.90[EUR][1000 genomes] |
| rs1361964 | 1.00[CEU][hapmap] |
| rs1419435 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1419437 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
| rs1419445 | 1.00[CEU][hapmap] |
| rs1894729 | 1.00[CEU][hapmap];0.87[YRI][hapmap] |
| rs2237778 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs2237783 | 1.00[CEU][hapmap] |
| rs2254417 | 1.00[CEU][hapmap] |
| rs2299523 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2299529 | 1.00[CEU][hapmap] |
| rs2896389 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3808123 | 1.00[CEU][hapmap] |
| rs4731343 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs6467110 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
