Variant report
| Variant | rs1894729 |
|---|---|
| Chromosome Location | chr7:126649775-126649776 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126643620..126647077-chr7:126648157..126650582,3 | K562 | blood: | |
| 2 | chr7:126634749..126636430-chr7:126647798..126650007,2 | K562 | blood: | |
| 3 | chr10:97065210..97065763-chr7:126649354..126650093,2 | MCF-7 | breast: | |
| 4 | chr7:126634749..126637802-chr7:126647798..126650684,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10954141 | 1.00[CEU][hapmap] |
| rs1156652 | 1.00[CEU][hapmap] |
| rs1156653 | 1.00[CEU][hapmap] |
| rs1156654 | 1.00[CEU][hapmap] |
| rs12535891 | 1.00[CEU][hapmap] |
| rs12673312 | 1.00[CEU][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1361964 | 1.00[CEU][hapmap] |
| rs1419435 | 0.96[CEU][hapmap];0.87[YRI][hapmap] |
| rs1419436 | 1.00[CEU][hapmap];0.87[YRI][hapmap] |
| rs1419437 | 1.00[CEU][hapmap] |
| rs1419445 | 1.00[CEU][hapmap] |
| rs2237778 | 1.00[CEU][hapmap];0.88[YRI][hapmap] |
| rs2237783 | 1.00[CEU][hapmap] |
| rs2254417 | 1.00[CEU][hapmap] |
| rs2299529 | 1.00[CEU][hapmap] |
| rs3808123 | 1.00[CEU][hapmap] |
| rs4731343 | 1.00[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs6467110 | 1.00[CEU][hapmap] |
| rs7778308 | 0.91[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758132 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2759562 | chr7:126494789-126677843 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv427805 | chr7:126494789-126677843 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv608379 | chr7:126643692-126657545 | Enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
