Variant report
| Variant | rs4731343 |
|---|---|
| Chromosome Location | chr7:126682318-126682319 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 7:126678600-126685844..7:127233104-127239235 | H1-hESC | embryonic stem cell: | embryo |
| 2 | 7:126085913-126088095..7:126678600-126685844 | K562 | blood: | |
| 3 | 7:126678600-126685844..7:127009457-127018926 | H1-hESC | embryonic stem cell: | embryo |
| 4 | 7:126678600-126685844..7:126890676-126899918 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
| ENSG00000048405 | Chromatin interaction |
| ENSG00000106328 | Chromatin interaction |
| ENSG00000179562 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10954141 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
| rs1156652 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs1156653 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs1156654 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap] |
| rs11971261 | 0.82[EUR][1000 genomes] |
| rs12535891 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap] |
| rs12673312 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs13229907 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1361964 | 1.00[CEU][hapmap];0.81[JPT][hapmap] |
| rs1419435 | 0.96[CEU][hapmap] |
| rs1419436 | 1.00[CEU][hapmap] |
| rs1419437 | 1.00[CEU][hapmap] |
| rs1419445 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap] |
| rs1894729 | 1.00[CEU][hapmap] |
| rs2237778 | 1.00[CEU][hapmap] |
| rs2237783 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap] |
| rs2254417 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap] |
| rs2299529 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap] |
| rs3808123 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap] |
| rs4728062 | 0.82[EUR][1000 genomes] |
| rs6467110 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:126682000-126682400 | Enhancers | Liver | Liver |
