Variant report

Variant	rs1426317
Chromosome Location	chr1:93939074-93939075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93937413..93939936-chr1:93941729..93943394,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs237437	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2433278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449376	1.00[YRI][hapmap]
rs2493644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2818971	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2818972	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7522258	1.00[AMR][1000 genomes]
rs810027	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93920000-93943800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:93921200-93939800	Weak transcription	Right Ventricle	heart
3	chr1:93922600-93944000	Weak transcription	Gastric	stomach
4	chr1:93927600-93943800	Weak transcription	Pancreas	Pancrea
5	chr1:93929000-93946400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:93930600-93943600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:93933400-93943800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:93934200-93943600	Weak transcription	Fetal Intestine Small	intestine
9	chr1:93934200-93943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:93937200-93939200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:93937400-93939200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:93937400-93939200	Weak transcription	Left Ventricle	heart
13	chr1:93937400-93939400	Weak transcription	Lung	lung
14	chr1:93937600-93939600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:93937600-93943800	Weak transcription	HepG2	liver
16	chr1:93937600-93954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:93937800-93939800	Weak transcription	Fetal Lung	lung
18	chr1:93937800-93940000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:93938000-93940000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:93938000-93940400	Weak transcription	Adipose Nuclei	Adipose
21	chr1:93938000-93941400	Weak transcription	Liver	Liver
22	chr1:93938000-93942400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr1:93938800-93939200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr1:93938800-93939400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr1:93938800-93939600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr1:93938800-93940000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr1:93939000-93939200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:93939000-93939200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr1:93939000-93939400	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr1:93939000-93939600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links