Variant report

Variant	rs2818972
Chromosome Location	chr1:93942798-93942799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1426317	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs237437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2433278	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2493644	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2818971	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522258	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93920000-93943800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:93922600-93944000	Weak transcription	Gastric	stomach
3	chr1:93927600-93943800	Weak transcription	Pancreas	Pancrea
4	chr1:93929000-93946400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:93930600-93943600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:93933400-93943800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:93934200-93943600	Weak transcription	Fetal Intestine Small	intestine
8	chr1:93934200-93943800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:93937600-93943800	Weak transcription	HepG2	liver
10	chr1:93937600-93954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:93939200-93943600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:93939600-93943400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:93939600-93946000	Weak transcription	Left Ventricle	heart
14	chr1:93940400-93943800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:93941200-93947400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:93942400-93943000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr1:93942400-93943600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr1:93942600-93942800	Enhancers	Liver	Liver
19	chr1:93942600-93943000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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