The 2.0 version of rSNPBase

Variant report

Variant rs2818971
Chromosome Location chr1:93964521-93964522
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:93943200-93974400 Weak transcription Fetal Lung lung
2 chr1:93944000-93974600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:93944200-93971800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr1:93944200-93974800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:93946800-93973200 Weak transcription Fetal Intestine Small intestine
6 chr1:93950400-93974800 Weak transcription HepG2 liver
7 chr1:93951000-93972800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:93952600-93973600 Weak transcription Brain Germinal Matrix brain
9 chr1:93954200-93968000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:93954400-93967000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr1:93955600-93965600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:93956200-93974000 Weak transcription HMEC breast
13 chr1:93956400-93975200 Weak transcription Fetal Stomach stomach
14 chr1:93956600-93967000 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr1:93958000-93997200 Weak transcription HSMMtube muscle
16 chr1:93958400-93965600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr1:93958800-93991800 Weak transcription Gastric stomach
18 chr1:93959000-93974800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr1:93959800-93964600 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr1:93960000-93965400 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr1:93960000-93965800 Weak transcription H1 Cell Line embryonic stem cell
22 chr1:93960000-93968400 Weak transcription Small Intestine intestine
23 chr1:93960200-93965800 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr1:93960200-93974400 Weak transcription Primary hematopoietic stem cells blood
25 chr1:93960400-93964600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr1:93960400-93964600 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr1:93960400-93970200 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr1:93961000-93988400 Weak transcription HUVEC blood vessel
29 chr1:93961600-93965000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
30 chr1:93961600-93965800 Weak transcription HUES6 Cell Line embryonic stem cell
31 chr1:93962600-93984200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:93963800-93965800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr1:93964000-93972800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:93964200-93964600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr1:93964200-93964800 Enhancers HUES64 Cell Line embryonic stem cell
36 chr1:93964200-93965800 Enhancers Breast Myoepithelial Primary Cells Breast
37 chr1:93964200-93965800 Weak transcription Fetal Intestine Large intestine
38 chr1:93964400-93964800 Enhancers Fetal Muscle Leg muscle
39 chr1:93964400-93965000 Enhancers Liver Liver
40 chr1:93964400-93965000 Flanking Active TSS K562 blood
41 chr1:93964400-93966800 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr1:93964400-93974800 Weak transcription H9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015