Variant report

Variant	rs7522258
Chromosome Location	chr1:93892781-93892782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1426317	1.00[AMR][1000 genomes]
rs237437	1.00[AMR][1000 genomes]
rs2433278	1.00[AMR][1000 genomes]
rs2493644	1.00[AMR][1000 genomes]
rs2818971	1.00[AMR][1000 genomes]
rs2818972	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871640	chr1:93807122-93953469	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	esv3375834	chr1:93872980-93904647	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93891800-93892800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr1:93891800-93893600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:93891800-93893600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:93892000-93893000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:93892000-93893000	Enhancers	Fetal Muscle Leg	muscle
6	chr1:93892000-93893600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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