Variant report

Variant	rs1431476
Chromosome Location	chr9:103948758-103948759
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103947852..103950299-chr9:103983743..103986254,2	K562	blood:
2	chr9:103948158..103950502-chr9:103953516..103956648,3	MCF-7	breast:
3	chr6:26250131..26252759-chr9:103947028..103949743,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256316	Chromatin interaction
ENSG00000197459	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10113988	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap]
rs10117175	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap]
rs10121939	0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10989424	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs10989425	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs10989426	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12336617	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs12338716	0.90[JPT][hapmap]
rs12339921	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs12344631	0.81[JPT][hapmap]
rs12345440	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs12346223	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs12346256	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12351067	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12685239	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs12686592	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2116285	0.89[CHB][hapmap];0.95[JPT][hapmap]
rs2303980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2567308	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2771062	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915418	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2987734	0.94[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2987735	0.94[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2987737	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7029916	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs735847	0.89[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948791	chr9:103893030-103964650	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103947200-103949000	Active TSS	HepG2	liver
2	chr9:103947200-103949800	Active TSS	Fetal Kidney	kidney
3	chr9:103947400-103950000	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr9:103947800-103948800	Enhancers	Liver	Liver

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