Variant report

Variant	rs2567308
Chromosome Location	chr9:103952138-103952139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10113988	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs10117175	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs10121939	0.84[JPT][hapmap]
rs10989426	0.85[JPT][hapmap]
rs12346223	0.81[JPT][hapmap]
rs12351067	0.84[JPT][hapmap]
rs12686592	0.84[JPT][hapmap]
rs1346942	0.81[JPT][hapmap];0.91[AMR][1000 genomes]
rs1431476	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1864661	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2033392	0.85[AMR][1000 genomes]
rs2303980	0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2771062	0.84[ASN][1000 genomes]
rs2915418	0.85[ASN][1000 genomes]
rs2915420	0.91[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2987735	0.84[JPT][hapmap]
rs2987737	0.83[JPT][hapmap]
rs7029916	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs9697078	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948791	chr9:103893030-103964650	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103950200-103953800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:103951200-103953200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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