Variant report

Variant	rs2987737
Chromosome Location	chr9:103965888-103965889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10113988	0.85[JPT][hapmap]
rs10117175	0.90[JPT][hapmap]
rs10121939	0.89[JPT][hapmap]
rs10989424	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs10989425	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs10989426	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs12336617	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs12338716	0.95[JPT][hapmap]
rs12339921	0.88[CHB][hapmap];0.95[JPT][hapmap]
rs12345440	0.95[JPT][hapmap]
rs12346223	0.93[JPT][hapmap]
rs12346256	0.94[JPT][hapmap]
rs12351067	0.84[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap]
rs12685239	0.84[CHB][hapmap];0.83[CHD][hapmap];0.95[JPT][hapmap]
rs12686592	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs1431476	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2116285	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs2303980	0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2567308	0.83[JPT][hapmap]
rs2771062	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915418	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2987734	0.85[CEU][hapmap];0.83[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2987735	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2987736	0.83[AFR][1000 genomes]
rs7029916	0.90[JPT][hapmap]
rs735847	0.84[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2987737	DHCR24	trans	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103964600-103978400	Weak transcription	HepG2	liver
2	chr9:103964800-103969800	Weak transcription	Brain Anterior Caudate	brain
3	chr9:103965200-103969600	Weak transcription	Brain Substantia Nigra	brain
4	chr9:103965400-103969000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:103965600-103969000	Weak transcription	Brain Angular Gyrus	brain
6	chr9:103965800-103969600	Weak transcription	Brain Hippocampus Middle	brain

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