Variant report

Variant	rs2303980
Chromosome Location	chr9:103947363-103947364
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:26250131..26252759-chr9:103947028..103949743,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF189-4	chr9:103947317-103947537	NONHSAT133724

Variant related genes	Relation type
ENSG00000197459	Chromatin interaction
ENSG00000256316	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10113988	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10117175	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10121939	0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10989424	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs10989425	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs10989426	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs12336617	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12338716	0.85[JPT][hapmap]
rs12339921	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12344631	0.85[JPT][hapmap]
rs12345440	0.94[CHB][hapmap];0.90[JPT][hapmap]
rs12346223	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12346256	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs12351067	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs12685239	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs12686592	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs1431476	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2116285	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs2567308	0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2771062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2915418	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2987734	0.94[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2987735	0.94[CEU][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2987737	0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7029916	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs735847	0.89[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948791	chr9:103893030-103964650	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103946600-103947400	Enhancers	Liver	Liver
2	chr9:103947000-103947600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:103947200-103947400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr9:103947200-103949000	Active TSS	HepG2	liver
5	chr9:103947200-103949800	Active TSS	Fetal Kidney	kidney

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