Variant report

Variant	rs1439603
Chromosome Location	chr5:124597285-124597286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11738947	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153456	0.84[EUR][1000 genomes]
rs12520745	0.82[EUR][1000 genomes]
rs12522773	0.82[EUR][1000 genomes]
rs1371379	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17152494	0.83[EUR][1000 genomes]
rs17152504	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs2196838	0.82[EUR][1000 genomes]
rs57076729	0.82[EUR][1000 genomes]
rs57689949	0.82[EUR][1000 genomes]
rs57839809	0.82[EUR][1000 genomes]
rs6878671	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124593200-124609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124593600-124597400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:124593600-124598600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:124594000-124597600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:124596800-124597800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr5:124596800-124598600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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