Variant report

Variant	rs57689949
Chromosome Location	chr5:124592604-124592605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1118619	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11738947	0.95[EUR][1000 genomes]
rs12153456	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12516905	0.81[ASN][1000 genomes]
rs12520745	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12522773	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1371379	0.95[EUR][1000 genomes]
rs1439603	0.82[EUR][1000 genomes]
rs1439606	0.91[EUR][1000 genomes]
rs17152484	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17152494	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17152504	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2196838	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57076729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57839809	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58310573	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6878671	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7442659	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124587000-124594400	Weak transcription	Psoas Muscle	Psoas
2	chr5:124589600-124594400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:124590600-124596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:124591200-124593000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:124591800-124594600	Enhancers	Fetal Heart	heart
6	chr5:124592200-124592800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:124592200-124593400	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr5:124592200-124593600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:124592200-124593600	Enhancers	Fetal Brain Male	brain
10	chr5:124592400-124593200	Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr5:124592400-124594000	Enhancers	HSMMtube	muscle
12	chr5:124592600-124593000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:124592600-124593200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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