Variant report

Variant	rs58310573
Chromosome Location	chr5:124580095-124580096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1118619	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11738947	0.81[EUR][1000 genomes]
rs12153456	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12516905	0.94[ASN][1000 genomes]
rs12520745	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12522773	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1371379	0.82[EUR][1000 genomes]
rs1439606	0.92[ASN][1000 genomes]
rs17152484	0.88[ASN][1000 genomes]
rs17152494	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17152504	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2196838	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57076729	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57689949	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57839809	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6878671	0.84[EUR][1000 genomes]
rs7442659	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124546600-124585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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