Variant report

Variant	rs17152504
Chromosome Location	chr5:124599551-124599552
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1118619	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11738947	0.94[EUR][1000 genomes]
rs12153456	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12520745	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12522773	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1371379	0.96[EUR][1000 genomes]
rs1439603	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs1439606	0.92[EUR][1000 genomes]
rs17152484	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17152494	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2196838	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57076729	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57689949	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57839809	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58310573	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6878671	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7442659	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124593200-124609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124597400-124599600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:124597800-124599600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:124598400-124600200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:124598400-124600200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:124598600-124599800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr5:124598600-124599800	Enhancers	HMEC	breast
8	chr5:124598600-124599800	Enhancers	NHEK	skin
9	chr5:124599000-124599600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:124599000-124599600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:124599000-124599800	Enhancers	HUVEC	blood vessel
12	chr5:124599200-124599600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:124599200-124599800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:124599200-124599800	Enhancers	NH-A	brain
15	chr5:124599400-124599600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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