Variant report

Variant	rs57839809
Chromosome Location	chr5:124573303-124573304
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1118619	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11738947	0.90[EUR][1000 genomes]
rs12153456	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12516905	0.83[ASN][1000 genomes]
rs12520745	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12522773	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1371379	0.91[EUR][1000 genomes]
rs1439603	0.82[EUR][1000 genomes]
rs1439606	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17152484	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17152494	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17152504	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2196838	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57076729	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57689949	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58310573	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6878671	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7442659	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124546600-124585200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124568600-124573400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:124571200-124573400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr5:124571200-124573600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:124571200-124573600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:124571400-124573400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:124571400-124573400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:124571400-124573600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:124572600-124573400	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:124573000-124573400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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