Variant report

Variant	rs1440409
Chromosome Location	chr4:144165399-144165400
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10519682	1.00[AMR][1000 genomes]
rs11944825	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11945757	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13140326	0.93[YRI][hapmap]
rs17017390	1.00[AMR][1000 genomes]
rs17017397	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017495	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017505	0.88[AFR][1000 genomes]
rs17017555	1.00[AMR][1000 genomes]
rs17017571	1.00[AMR][1000 genomes]
rs4132265	0.94[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4306912	0.87[AFR][1000 genomes]
rs58337819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58547743	1.00[AMR][1000 genomes]
rs61310654	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7677238	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144156200-144172600	Weak transcription	Right Atrium	heart
2	chr4:144163400-144172600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:144163600-144169800	Weak transcription	K562	blood
4	chr4:144164800-144171800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:144165200-144166000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:144165200-144166000	Enhancers	HMEC	breast
7	chr4:144165200-144166000	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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