Variant report

Variant	rs17017571
Chromosome Location	chr4:144217991-144217992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944825	1.00[AMR][1000 genomes]
rs11945757	1.00[AMR][1000 genomes]
rs1440409	1.00[AMR][1000 genomes]
rs17017390	1.00[AMR][1000 genomes]
rs17017397	1.00[AMR][1000 genomes]
rs17017481	1.00[AMR][1000 genomes]
rs17017495	1.00[AMR][1000 genomes]
rs17017555	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017625	0.80[YRI][hapmap]
rs4132265	1.00[AMR][1000 genomes]
rs58337819	1.00[AMR][1000 genomes]
rs58547743	1.00[AMR][1000 genomes]
rs61310654	1.00[AMR][1000 genomes]
rs7677238	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144216000-144219000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr4:144216000-144222800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:144216000-144223000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:144216600-144220400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:144216800-144218200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:144216800-144223400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:144216800-144223400	Weak transcription	Fetal Lung	lung
8	chr4:144216800-144223600	Weak transcription	Fetal Stomach	stomach
9	chr4:144216800-144223800	Weak transcription	Fetal Muscle Leg	muscle
10	chr4:144217400-144219000	Enhancers	HMEC	breast
11	chr4:144217400-144219000	Enhancers	NHEK	skin
12	chr4:144217400-144219200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:144217600-144219600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:144217800-144218000	Enhancers	Placenta	Placenta
15	chr4:144217800-144219200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:144217800-144219400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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