Variant report

Variant	rs17017555
Chromosome Location	chr4:144215408-144215409
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144213803..144215459-chr4:144216493..144217994,2	K562	blood:
2	chr4:144209479..144212330-chr4:144213134..144215865,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11944825	1.00[AMR][1000 genomes]
rs11945757	1.00[AMR][1000 genomes]
rs1440409	1.00[AMR][1000 genomes]
rs17017390	1.00[AMR][1000 genomes]
rs17017397	1.00[AMR][1000 genomes]
rs17017481	1.00[AMR][1000 genomes]
rs17017495	1.00[AMR][1000 genomes]
rs17017571	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017625	0.80[YRI][hapmap]
rs4132265	1.00[AMR][1000 genomes]
rs58337819	1.00[AMR][1000 genomes]
rs58547743	1.00[AMR][1000 genomes]
rs61310654	1.00[AMR][1000 genomes]
rs7677238	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144209000-144215600	Weak transcription	Right Atrium	heart
2	chr4:144209000-144217800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:144209600-144215600	Weak transcription	NHLF	lung
4	chr4:144209800-144215600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:144210400-144215600	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:144212200-144216800	Enhancers	Colon Smooth Muscle	Colon
7	chr4:144213000-144217400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:144213000-144217400	Weak transcription	NHEK	skin
9	chr4:144213600-144216800	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:144213600-144217600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:144214000-144216200	Enhancers	Stomach Smooth Muscle	stomach
12	chr4:144214200-144216800	Enhancers	Fetal Stomach	stomach
13	chr4:144214200-144217400	Weak transcription	HMEC	breast
14	chr4:144214600-144215800	Weak transcription	Lung	lung
15	chr4:144215000-144216000	Enhancers	Ovary	ovary
16	chr4:144215000-144216200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr4:144215000-144216600	Enhancers	Adipose Nuclei	Adipose
18	chr4:144215000-144217000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:144215200-144215800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:144215200-144216000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:144215200-144216000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr4:144215200-144216600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:144215200-144216800	Enhancers	Fetal Lung	lung
24	chr4:144215200-144216800	Enhancers	Placenta	Placenta
25	chr4:144215400-144216000	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr4:144215400-144216000	Enhancers	Stomach Mucosa	stomach
27	chr4:144215400-144216200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr4:144215400-144216200	Enhancers	Brain Substantia Nigra	brain
29	chr4:144215400-144216400	Enhancers	Osteobl	bone
30	chr4:144215400-144216800	Enhancers	Fetal Heart	heart
31	chr4:144215400-144216800	Enhancers	Fetal Intestine Small	intestine

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