Variant report

Variant	rs17017397
Chromosome Location	chr4:144152742-144152743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519682	1.00[AMR][1000 genomes]
rs11944825	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11945757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13140326	1.00[YRI][hapmap]
rs1440409	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017390	1.00[AMR][1000 genomes]
rs17017481	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17017495	1.00[AMR][1000 genomes]
rs17017555	1.00[AMR][1000 genomes]
rs17017571	1.00[AMR][1000 genomes]
rs4132265	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58337819	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58547743	1.00[AMR][1000 genomes]
rs61310654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7677238	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144125800-144155600	Weak transcription	Fetal Stomach	stomach
2	chr4:144135800-144153400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:144144400-144154600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:144146600-144160800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:144146800-144153600	Weak transcription	Stomach Mucosa	stomach
6	chr4:144148200-144153400	Weak transcription	Fetal Intestine Small	intestine
7	chr4:144148200-144153600	Weak transcription	Fetal Intestine Large	intestine
8	chr4:144151200-144152800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr4:144151200-144152800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr4:144151600-144153200	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links