Variant report

Variant	rs1456154
Chromosome Location	chr3:59718649-59718650
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1485724	0.92[EUR][1000 genomes]
rs17293417	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679503	0.83[EUR][1000 genomes]
rs6785999	0.92[EUR][1000 genomes]
rs720000	0.83[EUR][1000 genomes]
rs73092458	0.90[EUR][1000 genomes]
rs73092482	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73092496	0.90[EUR][1000 genomes]
rs9866051	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59716200-59719400	Enhancers	Primary hematopoietic stem cells	blood
2	chr3:59716200-59720000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:59716200-59720200	Enhancers	Fetal Thymus	thymus
4	chr3:59716400-59719000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr3:59716800-59719200	Enhancers	Dnd41	blood
6	chr3:59716800-59719400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:59717200-59719200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:59717200-59719800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:59717200-59719800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr3:59717400-59718800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:59717400-59719000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
12	chr3:59717400-59719200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr3:59717400-59719400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:59717400-59720200	Enhancers	Thymus	Thymus
15	chr3:59718000-59719600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr3:59718200-59719600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr3:59718400-59718800	Enhancers	Primary T cells from cord blood	blood
18	chr3:59718600-59719000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr3:59718600-59719000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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