Variant report

Variant	rs73092496
Chromosome Location	chr3:59731406-59731407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1456154	0.90[EUR][1000 genomes]
rs1485724	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17293417	0.90[EUR][1000 genomes]
rs4679503	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6785999	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs68003332	0.81[AMR][1000 genomes]
rs720000	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73092458	0.81[EUR][1000 genomes]
rs73092482	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73092672	0.81[AMR][1000 genomes]
rs9866051	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59720000-59732800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr3:59723000-59738600	Weak transcription	Thymus	Thymus
3	chr3:59723800-59737600	Weak transcription	Fetal Thymus	thymus
4	chr3:59727800-59732400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:59729400-59732000	Weak transcription	Dnd41	blood
6	chr3:59729800-59732400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:59730000-59738600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr3:59730400-59733800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:59731000-59731800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:59731200-59735600	Strong transcription	Primary T cells from cord blood	blood
11	chr3:59731400-59737400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:59731400-59739000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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