Variant report

Variant	rs17293417
Chromosome Location	chr3:59706139-59706140
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1456154	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1485724	0.92[EUR][1000 genomes]
rs4679503	0.83[EUR][1000 genomes]
rs6785999	0.92[EUR][1000 genomes]
rs720000	0.83[EUR][1000 genomes]
rs73092458	0.90[EUR][1000 genomes]
rs73092482	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73092496	0.90[EUR][1000 genomes]
rs9866051	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834706	chr3:59538151-59736014	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59702800-59706400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:59702800-59706400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:59703800-59706200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:59704000-59706200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:59704600-59706200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:59705200-59706200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:59705200-59706200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:59705600-59706600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:59705800-59706600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:59705800-59706600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:59706000-59706600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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