Variant report

Variant	rs720000
Chromosome Location	chr3:59736762-59736763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59736699..59738413-chr3:59739398..59742016,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1456154	0.83[EUR][1000 genomes]
rs1485724	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17293417	0.83[EUR][1000 genomes]
rs4679503	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6785999	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68003332	0.85[EUR][1000 genomes]
rs73092482	0.92[EUR][1000 genomes]
rs73092496	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73092672	0.82[EUR][1000 genomes]
rs9866051	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59723000-59738600	Weak transcription	Thymus	Thymus
2	chr3:59723800-59737600	Weak transcription	Fetal Thymus	thymus
3	chr3:59730000-59738600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:59731400-59737400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:59731400-59739000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:59732000-59737600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:59733200-59738800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr3:59733200-59740200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:59734000-59738000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:59734200-59739800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:59734800-59738400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:59735200-59737600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:59735400-59739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:59735600-59738400	Weak transcription	Dnd41	blood
15	chr3:59735600-59738800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:59735600-59738800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr3:59735600-59739400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:59735600-59739800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:59735800-59742400	Weak transcription	Ovary	ovary
20	chr3:59736000-59739600	Weak transcription	NHDF-Ad	bronchial
21	chr3:59736200-59738200	Weak transcription	Primary T cells from cord blood	blood
22	chr3:59736400-59737000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:59736400-59738400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr3:59736400-59739600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr3:59736400-59739800	Weak transcription	Primary monocytes fromperipheralblood	blood

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