Variant report

Variant	rs1461114
Chromosome Location	chr3:115948170-115948171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12631840	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12631903	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1461132	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1461134	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1468001	0.90[ASN][1000 genomes]
rs1468003	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1898	0.98[ASN][1000 genomes]
rs1947689	0.90[ASN][1000 genomes]
rs2864074	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2864075	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56138725	0.87[ASN][1000 genomes]
rs6438303	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6792060	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6807792	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7618443	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7638493	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7640143	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7641198	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7644082	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9826725	0.87[ASN][1000 genomes]
rs9834017	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9834315	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9834589	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9834897	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9870541	0.84[ASN][1000 genomes]
rs9875609	0.89[ASN][1000 genomes]
rs998806	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs998807	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115947000-115948200	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:115947600-115949200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115947800-115948800	Weak transcription	Brain Germinal Matrix	brain
4	chr3:115948000-115948800	Weak transcription	Brain Anterior Caudate	brain

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