Variant report

Variant	rs56138725
Chromosome Location	chr3:115896283-115896284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12330535	0.81[ASN][1000 genomes]
rs12631840	0.95[ASN][1000 genomes]
rs12631903	0.95[ASN][1000 genomes]
rs13078076	0.81[ASN][1000 genomes]
rs1461109	0.81[ASN][1000 genomes]
rs1461114	0.87[ASN][1000 genomes]
rs1461116	0.81[ASN][1000 genomes]
rs1461132	0.98[ASN][1000 genomes]
rs1461134	0.97[ASN][1000 genomes]
rs1468001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1468003	0.95[ASN][1000 genomes]
rs1898	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1947689	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2864074	0.98[ASN][1000 genomes]
rs2864075	0.98[ASN][1000 genomes]
rs6438303	0.95[ASN][1000 genomes]
rs6792060	0.92[ASN][1000 genomes]
rs6807792	0.95[ASN][1000 genomes]
rs7618443	0.98[ASN][1000 genomes]
rs7638493	0.94[ASN][1000 genomes]
rs7640143	0.95[ASN][1000 genomes]
rs7641198	0.94[ASN][1000 genomes]
rs7644082	0.98[ASN][1000 genomes]
rs9812548	0.81[ASN][1000 genomes]
rs9818695	0.81[ASN][1000 genomes]
rs9826725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9834017	0.95[ASN][1000 genomes]
rs9834315	0.95[ASN][1000 genomes]
rs9834589	0.94[ASN][1000 genomes]
rs9834897	0.95[ASN][1000 genomes]
rs9835757	0.83[ASN][1000 genomes]
rs9870541	0.94[ASN][1000 genomes]
rs9875609	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs998806	0.94[ASN][1000 genomes]
rs998807	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2751976	chr3:115867310-115903310	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2755082	chr3:115896250-115902901	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2755366	chr3:115896250-115902901	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2755965	chr3:115896250-115902901	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115890000-115897800	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:115895800-115897600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:115896200-115896400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:115896200-115897800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:115896200-115898000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:115896200-115898000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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