Variant report

Variant	rs9818695
Chromosome Location	chr3:115863814-115863815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10511355	0.88[CHB][hapmap]
rs12330535	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13078076	1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs1461109	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461116	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461132	0.83[ASN][1000 genomes]
rs1461134	0.84[ASN][1000 genomes]
rs1468003	0.88[CHB][hapmap]
rs1898	0.88[CHB][hapmap]
rs1947689	0.88[CHB][hapmap]
rs2864074	0.88[CHB][hapmap];0.83[ASN][1000 genomes]
rs2864075	0.83[ASN][1000 genomes]
rs56138725	0.81[ASN][1000 genomes]
rs6438299	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6438300	0.88[CHB][hapmap]
rs6438303	0.88[CHB][hapmap]
rs6438304	0.88[CHB][hapmap]
rs6807792	1.00[CHB][hapmap]
rs7618443	0.83[ASN][1000 genomes]
rs7629590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7638493	0.88[CHB][hapmap]
rs7640143	0.88[CHB][hapmap]
rs7641198	0.88[CHB][hapmap]
rs7644082	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs9812548	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9826725	0.81[ASN][1000 genomes]
rs9834589	0.88[CHB][hapmap]
rs9834897	0.88[CHB][hapmap]
rs9835757	1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[ASN][1000 genomes]
rs9870541	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs9872975	0.95[ASN][1000 genomes]
rs9875609	0.88[CHB][hapmap]
rs998807	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115855200-115864200	Weak transcription	Fetal Lung	lung
2	chr3:115859400-115866000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:115863600-115866800	Weak transcription	Brain Germinal Matrix	brain

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