Variant report

Variant	rs1898
Chromosome Location	chr3:115947977-115947978
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10511355	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12631840	0.90[ASN][1000 genomes]
rs12631903	0.90[ASN][1000 genomes]
rs13078076	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs1461114	0.98[ASN][1000 genomes]
rs1461116	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs1461132	0.87[ASN][1000 genomes]
rs1461134	0.85[ASN][1000 genomes]
rs1468001	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1468003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1947689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2864074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2864075	0.87[ASN][1000 genomes]
rs4831123	1.00[CEU][hapmap]
rs56138725	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6438299	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs6438300	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6438303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6438304	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6792060	0.87[ASN][1000 genomes]
rs6807792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7618443	0.87[ASN][1000 genomes]
rs7629590	0.88[CHB][hapmap]
rs7638493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7640143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7641198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7644082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9812548	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs9818695	0.88[CHB][hapmap]
rs9826725	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9834017	0.90[ASN][1000 genomes]
rs9834315	0.90[ASN][1000 genomes]
rs9834589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9834897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9835757	0.88[CHB][hapmap];0.85[JPT][hapmap]
rs9870541	0.88[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9875609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs998806	0.89[ASN][1000 genomes]
rs998807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115947000-115948200	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:115947600-115949200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115947800-115948800	Weak transcription	Brain Germinal Matrix	brain

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