Variant report

Variant	rs9875609
Chromosome Location	chr3:115902720-115902721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10511355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap]
rs12631840	0.97[ASN][1000 genomes]
rs12631903	0.97[ASN][1000 genomes]
rs13078076	0.88[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap]
rs1461114	0.89[ASN][1000 genomes]
rs1461116	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap]
rs1461132	0.94[ASN][1000 genomes]
rs1461134	0.95[ASN][1000 genomes]
rs1468001	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1468003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1898	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1947689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2864074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2864075	0.94[ASN][1000 genomes]
rs4831123	1.00[CEU][hapmap]
rs56138725	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6438299	0.88[CHB][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap]
rs6438300	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs6438303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6438304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs6784939	1.00[YRI][hapmap]
rs6792060	0.94[ASN][1000 genomes]
rs6807792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7618443	0.94[ASN][1000 genomes]
rs7621552	1.00[YRI][hapmap]
rs7629590	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7638493	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7640143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7641198	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7644082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9289036	1.00[YRI][hapmap]
rs9812548	0.88[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap]
rs9818695	0.88[CHB][hapmap]
rs9826129	1.00[YRI][hapmap]
rs9826725	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9834017	0.97[ASN][1000 genomes]
rs9834315	0.97[ASN][1000 genomes]
rs9834589	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9834897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9835757	0.88[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs9870541	0.88[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs998806	0.95[ASN][1000 genomes]
rs998807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2751976	chr3:115867310-115903310	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2755082	chr3:115896250-115902901	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2755366	chr3:115896250-115902901	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2755965	chr3:115896250-115902901	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2753988	chr3:115901032-115902901	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv2755625	chr3:115901032-115902901	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv2753516	chr3:115901310-115903310	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv2752925	chr3:115901310-115908310	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9875609	KIAA2018	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115898600-115907000	Weak transcription	Colon Smooth Muscle	Colon

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