Variant report

Variant	rs1461760
Chromosome Location	chr3:109985360-109985361
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1461758	1.00[ASN][1000 genomes]
rs1870803	1.00[ASN][1000 genomes]
rs2399318	1.00[ASN][1000 genomes]
rs2614678	1.00[ASN][1000 genomes]
rs2614692	1.00[ASN][1000 genomes]
rs2614693	1.00[ASN][1000 genomes]
rs2614694	1.00[ASN][1000 genomes]
rs2614695	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2895373	1.00[ASN][1000 genomes]
rs73851460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73851465	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7427476	1.00[ASN][1000 genomes]
rs9865517	1.00[ASN][1000 genomes]
rs9883356	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877334	chr3:109983269-110044601	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109983800-109985600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:109984000-109985400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:109984200-109990600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:109984400-109986800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:109985000-109992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:109985200-109986200	Weak transcription	Ovary	ovary
7	chr3:109985200-109991000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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