Variant report
| Variant | rs7427476 |
|---|---|
| Chromosome Location | chr3:110067815-110067816 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs13093964 | 0.94[EUR][1000 genomes] |
| rs13098793 | 0.85[EUR][1000 genomes] |
| rs1461758 | 1.00[ASN][1000 genomes] |
| rs1461760 | 1.00[ASN][1000 genomes] |
| rs1870803 | 1.00[ASN][1000 genomes] |
| rs2399318 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2399341 | 0.89[EUR][1000 genomes] |
| rs2614678 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2614692 | 1.00[ASN][1000 genomes] |
| rs2614693 | 1.00[ASN][1000 genomes] |
| rs2614694 | 1.00[ASN][1000 genomes] |
| rs2614695 | 1.00[ASN][1000 genomes] |
| rs2895373 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2895374 | 0.85[EUR][1000 genomes] |
| rs4458394 | 0.89[EUR][1000 genomes] |
| rs6437904 | 0.89[EUR][1000 genomes] |
| rs6776690 | 0.89[EUR][1000 genomes] |
| rs6807746 | 0.81[EUR][1000 genomes] |
| rs73851460 | 1.00[ASN][1000 genomes] |
| rs73851465 | 1.00[ASN][1000 genomes] |
| rs9809146 | 0.89[EUR][1000 genomes] |
| rs9809689 | 0.94[EUR][1000 genomes] |
| rs9814439 | 0.89[EUR][1000 genomes] |
| rs9842995 | 0.94[EUR][1000 genomes] |
| rs9851284 | 0.85[EUR][1000 genomes] |
| rs9861768 | 0.89[EUR][1000 genomes] |
| rs9865517 | 1.00[ASN][1000 genomes] |
| rs9883356 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877332 | chr3:109575764-110186611 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv829668 | chr3:109956403-110095215 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv460818 | chr3:110007205-110155824 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv591272 | chr3:110007205-110155824 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv2757885 | chr3:110013166-110095330 | Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv2759168 | chr3:110013166-110095330 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv829669 | chr3:110022724-110188397 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:110063800-110071400 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 2 | chr3:110064400-110071000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 3 | chr3:110065400-110068000 | Weak transcription | HepG2 | liver |
