Variant report

Variant	rs9865517
Chromosome Location	chr3:109990863-109990864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1461758	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1461760	1.00[ASN][1000 genomes]
rs1870803	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399318	1.00[ASN][1000 genomes]
rs2614678	1.00[ASN][1000 genomes]
rs2614692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614695	1.00[ASN][1000 genomes]
rs2895373	1.00[ASN][1000 genomes]
rs4682570	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73851460	1.00[ASN][1000 genomes]
rs73851465	1.00[ASN][1000 genomes]
rs7427476	1.00[ASN][1000 genomes]
rs9883356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv460816	chr3:109878008-110044601	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv591271	chr3:109878008-110044601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv877334	chr3:109983269-110044601	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv877335	chr3:109986271-110061676	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3429591	chr3:109990785-109991225	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:109985000-109992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:109985200-109991000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:109985400-109991000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:109988200-109991200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:109990600-109992200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:109990600-109992400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:109990600-109992400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:109990800-109992200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:109990800-109992600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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