Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13093964	0.94[EUR][1000 genomes]
rs13098793	0.85[EUR][1000 genomes]
rs1461758	1.00[ASN][1000 genomes]
rs1461760	1.00[ASN][1000 genomes]
rs1870803	1.00[ASN][1000 genomes]
rs2399341	0.89[EUR][1000 genomes]
rs2614678	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2614692	1.00[ASN][1000 genomes]
rs2614693	1.00[ASN][1000 genomes]
rs2614694	1.00[ASN][1000 genomes]
rs2614695	1.00[ASN][1000 genomes]
rs2895373	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895374	0.85[EUR][1000 genomes]
rs4458394	0.89[EUR][1000 genomes]
rs6437904	0.89[EUR][1000 genomes]
rs6776690	0.89[EUR][1000 genomes]
rs6807746	0.81[EUR][1000 genomes]
rs73851460	1.00[ASN][1000 genomes]
rs73851465	1.00[ASN][1000 genomes]
rs7427476	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9809146	0.89[EUR][1000 genomes]
rs9809689	0.94[EUR][1000 genomes]
rs9814439	0.89[EUR][1000 genomes]
rs9842995	0.94[EUR][1000 genomes]
rs9851284	0.85[EUR][1000 genomes]
rs9861768	0.89[EUR][1000 genomes]
rs9865517	1.00[ASN][1000 genomes]
rs9883356	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877332	chr3:109575764-110186611	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv829668	chr3:109956403-110095215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv460818	chr3:110007205-110155824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv591272	chr3:110007205-110155824	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2757885	chr3:110013166-110095330	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2759168	chr3:110013166-110095330	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv829669	chr3:110022724-110188397	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110060200-110063400	Weak transcription	Liver	Liver
2	chr3:110060600-110062000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:110060600-110062200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:110060600-110062400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:110060600-110063000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:110060800-110062200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:110060800-110062200	Weak transcription	NHDF-Ad	bronchial
8	chr3:110060800-110062400	Weak transcription	NHLF	lung
9	chr3:110061400-110063600	Enhancers	HSMM	muscle
10	chr3:110061600-110062400	Weak transcription	HSMMtube	muscle
11	chr3:110061800-110062200	Enhancers	A549	lung
12	chr3:110061800-110063400	Enhancers	HepG2	liver
13	chr3:110061800-110063600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:110061800-110064000	Enhancers	HUVEC	blood vessel
15	chr3:110061800-110064600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:110061800-110064600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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