Variant report

Variant	rs1469364
Chromosome Location	chr7:18452469-18452470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1035836	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1365892	1.00[AMR][1000 genomes]
rs1405616	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1405617	0.82[YRI][hapmap]
rs1559952	1.00[AMR][1000 genomes]
rs1633987	0.82[YRI][hapmap]
rs2114727	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs213266	1.00[AMR][1000 genomes]
rs213267	1.00[AMR][1000 genomes]
rs213268	1.00[AMR][1000 genomes]
rs213269	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs213277	1.00[AMR][1000 genomes]
rs2520460	1.00[CHD][hapmap]
rs2704288	1.00[AMR][1000 genomes]
rs35476249	1.00[AMR][1000 genomes]
rs58844869	1.00[AMR][1000 genomes]
rs73309549	1.00[AMR][1000 genomes]
rs801757	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18429200-18461200	Weak transcription	Aorta	Aorta
2	chr7:18445600-18454600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:18445600-18460400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr7:18445600-18482000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr7:18445800-18467000	Weak transcription	Primary B cells from cord blood	blood
6	chr7:18447200-18468200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:18447400-18466400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:18448200-18467800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:18449000-18454600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:18449200-18454400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:18449200-18454400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:18450000-18454600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:18451200-18454600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:18452200-18453800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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